/*
 * ovfix.c
 *
 * fix auto-overlap-split histories
 */
#include <stdio.h>
#include <wstruct.h>
#include <chromanal.h>


main()
{
	struct chromosome *ol[300], *obj, *pobj, *readobj();
	int i,nummax;
	for (i=0; i<300; i++)
		ol[i] = NULL;
	nummax = 0;	
	while ((obj=readobj(stdin))!=NULL) {
		ol[obj->plist->number] = obj;
		if (obj->plist->number > nummax)
			nummax = obj->plist->number;
	}
	for (i=1; i<=nummax; i++) {
		obj = ol[i];
		if (obj != NULL && obj->plist->pnumber != 0 && obj->plist->history[0] == 8) {
			pobj = ol[obj->plist->pnumber];
			if (pobj != NULL && pobj->plist->Cotype == OVERLAP) {
				fprintf(stderr,"ov-auto fixed\n");
				obj->plist->history[0] = 16;
				pobj->plist->history[1] = 16;
			}
		}
		else if (obj != NULL && obj->plist->pnumber != 0 && obj->plist->history[0] == 2)
			fprintf(stderr,"ov-man\n");
	}
	for (i=1; i<=nummax; i++)
		if (ol[i] != NULL)
			writeobj(stdout,ol[i]);
}