/*
 * xprobeold.h
 *
 * structure definitions for x-probed chromosome identification
 */

/*
 * bit-equivalences for btype/Cbtype,
 * see <otypes.h>
 */
#define XPROBE	DICENTRIC
#define FRAXA	ACROCENTRIC
#define FPX	CROSSARMS

struct xfeats {
	int btype;	/* classified type */
	int Cbtype;	/* trained type */
	int number;	/* serial number from property list */
	int rank;	/* of density peak among metacentrics */
	int xrank;	/* of density peak among selected x's */
	int relarea;	/* 100*area / median area */
	int cindexa;	/* area c.i., -1 if centromere not found */
	int pindexa;	/* area "probe index" (cf. ci) */
	int difpos;	/* distance to density profile peak */
	int profpeak;	/* density profile peak value */
	int deriv2;	/* density profile 2nd derivative at peak */
	int objpeak;	/* object grey-level peak (99.5% percentile) */
	int objmedian;	/* object grey-level median (from histogram) */
	int vcvclass;	/* class from a quadratic discriminant classifier */
	float vcvscore;	/* the corresponding score for class 1 */
	int vcvrank;	/* the rank by this score */
	int classifmale;	/* class of this chromosome assuming cell is male */
	int classiffemale;	/* ditto, assuming female */
	char *fname;
};


/*
 * box classifier limits
 */
#define MAXRANK		3
#define XRANK		5
#define TOOSMALL	75
#define TOOBIG		250
#define ARLB		50
#define ARUB		220
#define AREAMIN		105
#define AREAMAX		150
#define CIMIN		31
#define CIMAX		43
#define PILB		28
#define PIUB		50
#define PIMIN		35
#define PIMAX		47
#define D2MIN		25
#define DIFF		5